Compile problem

I am trying to compile some code in the latest debian release. I got the latest source by using –

wget https://raw.github.com/gkaindl/beaglebone-ubuntu-scripts/master/bb-get-rcn-kernel-source.sh

chmod +x bb-get-rcn-kernel-source.sh

./bb-get-rcn-kernel-source.sh

uname-r on my system returns - 3.8.13-bone43

The compile and install goes without errors but the modules are placed in

/lib/modules/3.8.13 and not /lib/modules/3.8.13-bone43 where all of the system modules reside.

When I try to start the application it tells me there are no modules.

What is wrong? The script does download the kernel and bone43 patches.