OK I I ran the update twice in /opt/scripts/tools and got the Already up to date message(it updated the first time).
Now when I run the script ./beaglebone-black-make-microSD-flasher-from-eMMC.sh I get this in seriall output.
U-Boot SPL 2016.03-dirty (Apr 19 2016 - 15:43:26)
Trying to boot from MMC
bad magic
U-Boot 2016.03-dirty (Apr 19 2016 - 15:43:26 -0700)
Watchdog enabled
I2C: ready
DRAM: 512 MiB
Reset Source: Power-on reset has occurred.
MMC: OMAP SD/MMC: 0, OMAP SD/MMC: 1
Using default environment
Net: not set. Validating first E-fuse MAC
cpsw, usb_ether
Press SPACE to abort autoboot in 2 seconds
switch to partitions #0, OK
mmc0 is current device
Scanning mmc 0:1…
gpio: pin 56 (gpio 56) value is 0
gpio: pin 55 (gpio 55) value is 0
gpio: pin 54 (gpio 54) value is 0
gpio: pin 53 (gpio 53) value is 1
switch to partitions #0, OK
mmc0 is current device
gpio: pin 54 (gpio 54) value is 1
Checking for: /uEnv.txt …
Checking for: /boot.scr …
Checking for: /boot/boot.scr …
Checking for: /boot/uEnv.txt …
gpio: pin 55 (gpio 55) value is 1
1066 bytes read in 16 ms (64.5 KiB/s)
Loaded environment from /boot/uEnv.txt
debug: [dtb=am335x-boneblack-emmc-overlay.dtb] …
Using: dtb=am335x-boneblack-emmc-overlay.dtb …
Checking if uname_r is set in /boot/uEnv.txt…
gpio: pin 56 (gpio 56) value is 1
Running uname_boot …
loading /boot/vmlinuz-4.4.16-bone-rt-r11 …
7617496 bytes read in 440 ms (16.5 MiB/s)
loading /boot/dtbs/4.4.16-bone-rt-r11/am335x-boneblack-emmc-overlay.dtb …
54722 bytes read in 39 ms (1.3 MiB/s)
loading /boot/initrd.img-4.4.16-bone-rt-r11 …
5445661 bytes read in 320 ms (16.2 MiB/s)
debug: [console=ttyO0,115200n8 bone_capemgr.enable_partno=BB-APA-01,BB-ADC root=UUID=e4315bf8-7c53-4964-bfab-1bba46c3c8ba ro rootfstype=ext4 rootwait init=/opt/scripts/tools/eMMC/init-eMMC-flasher-v3.sh] …
debug: [bootz 0x82000000 0x88080000:53181d 0x88000000] …
Kernel image @ 0x82000000 [ 0x000000 - 0x743bd8 ]
Flattened Device Tree blob at 88000000
Booting using the fdt blob at 0x88000000
Loading Ramdisk to 8face000, end 8ffff81d … OK
Loading Device Tree to 8fabd000, end 8facd5c1 … OK
Starting kernel …
[ 0.000000] Booting Linux on physical CPU 0x0
[ 0.000000] Initializing cgroup subsys cpuset
[ 0.000000] Initializing cgroup subsys cpu
[ 0.000000] Initializing cgroup subsys cpuacct
[ 0.000000] Linux version 4.4.16-bone-rt-r11 (root@a5-imx6q-wandboard-2gb) (gcc version 4.9.2 (Debian 4.9.2-10) ) #1 PREEMPT RT Tue Aug 2 19:38:19 UTC 2016
[ 0.000000] CPU: ARMv7 Processor [413fc082] revision 2 (ARMv7), cr=50c5387d
[ 0.000000] CPU: PIPT / VIPT nonaliasing data cache, VIPT aliasing instruction cache
[ 0.000000] Machine model: TI AM335x BeagleBone Black
[ 0.000000] cma: Reserved 24 MiB at 0x9e800000
[ 0.000000] Memory policy: Data cache writeback
[ 0.000000] CPU: All CPU(s) started in SVC mode.
[ 0.000000] AM335X ES2.1 (sgx neon )
[ 0.000000] Built 1 zonelists in Zone order, mobility grouping on. Total pages: 129920
[ 0.000000] Kernel command line: console=ttyO0,115200n8 bone_capemgr.enable_partno=BB-APA-01,BB-ADC root=UUID=e4315bf8-7c53-4964-bfab-1bba46c3c8ba ro rootfstype=ext4 rootwait init=/opt/scripts/tools/eMMC/init-eMMC-flasher-v3.sh
[ 0.000000] PID hash table entries: 2048 (order: 1, 8192 bytes)
[ 0.000000] Dentry cache hash table entries: 65536 (order: 6, 262144 bytes)
[ 0.000000] Inode-cache hash table entries: 32768 (order: 5, 131072 bytes)
[ 0.000000] Memory: 475976K/524288K available (7146K kernel code, 852K rwdata, 3652K rodata, 472K init, 914K bss, 23736K reserved, 24576K cma-reserved, 0K highmem)
[ 0.000000] Virtual kernel memory layout:
[ 0.000000] vector : 0xffff0000 - 0xffff1000 ( 4 kB)
[ 0.000000] fixmap : 0xffc00000 - 0xfff00000 (3072 kB)
[ 0.000000] vmalloc : 0xe0800000 - 0xff800000 ( 496 MB)
[ 0.000000] lowmem : 0xc0000000 - 0xe0000000 ( 512 MB)
[ 0.000000] pkmap : 0xbfe00000 - 0xc0000000 ( 2 MB)
[ 0.000000] modules : 0xbf800000 - 0xbfe00000 ( 6 MB)
[ 0.000000] .text : 0xc0008000 - 0xc0a93c9c (10800 kB)
[ 0.000000] .init : 0xc0a94000 - 0xc0b0a000 ( 472 kB)
[ 0.000000] .data : 0xc0b0a000 - 0xc0bdf35c ( 853 kB)
[ 0.000000] .bss : 0xc0be2000 - 0xc0cc6994 ( 915 kB)
[ 0.000000] SLUB: HWalign=64, Order=0-3, MinObjects=0, CPUs=1, Nodes=1
[ 0.000000] Preemptible hierarchical RCU implementation.
[ 0.000000] Build-time adjustment of leaf fanout to 32.
[ 0.000000] NR_IRQS:16 nr_irqs:16 16
[ 0.000000] IRQ: Found an INTC at 0xfa200000 (revision 5.0) with 128 interrupts
[ 0.000000] OMAP clockevent source: timer2 at 24000000 Hz
[ 0.000013] sched_clock: 32 bits at 24MHz, resolution 41ns, wraps every 89478484971ns
[ 0.000025] clocksource: timer1: mask: 0xffffffff max_cycles: 0xffffffff, max_idle_ns: 79635851949 ns
[ 0.000033] OMAP clocksource: timer1 at 24000000 Hz
[ 0.000198] Console: colour dummy device 80x30
[ 0.000350] WARNING: Your ‘console=ttyO0’ has been replaced by ‘ttyS0’
[ 0.000352] This ensures that you still see kernel messages. Please
[ 0.000354] update your kernel commandline.
[ 0.089111] Calibrating delay loop… 996.14 BogoMIPS (lpj=4980736)
[ 0.089116] pid_max: default: 32768 minimum: 301
[ 0.089231] Security Framework initialized
[ 0.089237] Yama: becoming mindful.
[ 0.089266] AppArmor: AppArmor disabled by boot time parameter
[ 0.089428] Mount-cache hash table entries: 1024 (order: 0, 4096 bytes)
[ 0.089435] Mountpoint-cache hash table entries: 1024 (order: 0, 4096 bytes)
[ 0.090191] Initializing cgroup subsys io
[ 0.090210] Initializing cgroup subsys memory
[ 0.090242] Initializing cgroup subsys devices
[ 0.090255] Initializing cgroup subsys freezer
[ 0.090267] Initializing cgroup subsys net_cls
[ 0.090277] Initializing cgroup subsys perf_event
[ 0.090286] Initializing cgroup subsys net_prio
[ 0.090296] Initializing cgroup subsys pids
[ 0.090392] CPU: Testing write buffer coherency: ok
[ 0.090398] ftrace: allocating 33011 entries in 65 pages
[ 0.172669] Setting up static identity map for 0x800081c0 - 0x8000820c
[ 0.177265] devtmpfs: initialized
[ 0.192680] VFP support v0.3: implementor 41 architecture 3 part 30 variant c rev 3
[ 0.204450] omap_hwmod: tptc0 using broken dt data from edma
[ 0.204589] omap_hwmod: tptc1 using broken dt data from edma
[ 0.204712] omap_hwmod: tptc2 using broken dt data from edma
[ 0.209542] omap_hwmod: debugss: _wait_target_disable failed
[ 0.264728] clocksource: jiffies: mask: 0xffffffff max_cycles: 0xffffffff, max_idle_ns: 19112604462750000 ns
[ 0.266799] xor: measuring software checksum speed
[ 0.359142] arm4regs : 1222.400 MB/sec
[ 0.459092] 8regs : 1094.400 MB/sec
[ 0.559089] 32regs : 1154.000 MB/sec
[ 0.659087] neon : 1685.200 MB/sec
[ 0.659096] xor: using function: neon (1685.200 MB/sec)
[ 0.659132] pinctrl core: initialized pinctrl subsystem
[ 0.660925] NET: Registered protocol family 16
[ 0.663604] DMA: preallocated 256 KiB pool for atomic coherent allocations
[ 0.668579] OMAP GPIO hardware version 0.1
[ 0.678244] No ATAGs?
[ 0.678274] hw-breakpoint: debug architecture 0x4 unsupported.
[ 0.879279] raid6: int32x1 gen() 264 MB/s
[ 1.049183] raid6: int32x1 xor() 247 MB/s
[ 1.219179] raid6: int32x2 gen() 374 MB/s
[ 1.389190] raid6: int32x2 xor() 282 MB/s
[ 1.559196] raid6: int32x4 gen() 388 MB/s
[ 1.729090] raid6: int32x4 xor() 266 MB/s
[ 1.899103] raid6: int32x8 gen() 357 MB/s
[ 2.069125] raid6: int32x8 xor() 233 MB/s
[ 2.239108] raid6: neonx1 gen() 1449 MB/s
[ 2.409098] raid6: neonx1 xor() 846 MB/s
[ 2.579105] raid6: neonx2 gen() 1878 MB/s
[ 2.749097] raid6: neonx2 xor() 1131 MB/s
[ 2.919089] raid6: neonx4 gen() 1985 MB/s
[ 3.089110] raid6: neonx4 xor() 1200 MB/s
[ 3.259091] raid6: neonx8 gen() 1210 MB/s
[ 3.429095] raid6: neonx8 xor() 671 MB/s
[ 3.429103] raid6: using algorithm neonx4 gen() 1985 MB/s
[ 3.429111] raid6: … xor() 1200 MB/s, rmw enabled
[ 3.429117] raid6: using intx1 recovery algorithm
[ 3.430900] edma 49000000.edma: Legacy memcpy is enabled, things might not work
[ 3.437385] edma 49000000.edma: TI EDMA DMA engine driver
[ 3.441554] SCSI subsystem initialized
[ 3.442197] usbcore: registered new interface driver usbfs
[ 3.442264] usbcore: registered new interface driver hub
[ 3.442370] usbcore: registered new device driver usb
[ 3.442829] omap_i2c 44e0b000.i2c: could not find pctldev for node /ocp/l4_wkup@44c00000/scm@210000/pinmux@800/pinmux_i2c0_pins, deferring probe
[ 3.442875] omap_i2c 4819c000.i2c: could not find pctldev for node /ocp/l4_wkup@44c00000/scm@210000/pinmux@800/pinmux_i2c2_pins, deferring probe
[ 3.442974] media: Linux media interface: v0.10
[ 3.443037] Linux video capture interface: v2.00
[ 3.443128] pps_core: LinuxPPS API ver. 1 registered
[ 3.443168] PTP clock support registered
[ 3.443755] omap-mailbox 480c8000.mailbox: omap mailbox rev 0x400
[ 3.444900] NetLabel: Initializing
[ 3.444913] NetLabel: domain hash size = 128
[ 3.444919] NetLabel: protocols = UNLABELED CIPSOv4
[ 3.444984] NetLabel: unlabeled traffic allowed by default
[ 3.445530] clocksource: Switched to clocksource timer1
[ 3.545892] NET: Registered protocol family 2
[ 3.546622] TCP established hash table entries: 4096 (order: 2, 16384 bytes)
[ 3.546688] TCP bind hash table entries: 4096 (order: 4, 98304 bytes)
[ 3.546824] TCP: Hash tables configured (established 4096 bind 4096)
[ 3.546896] UDP hash table entries: 256 (order: 2, 16384 bytes)
[ 3.546925] UDP-Lite hash table entries: 256 (order: 2, 16384 bytes)
[ 3.547143] NET: Registered protocol family 1
[ 3.547691] RPC: Registered named UNIX socket transport module.
[ 3.547703] RPC: Registered udp transport module.
[ 3.547710] RPC: Registered tcp transport module.
[ 3.547717] RPC: Registered tcp NFSv4.1 backchannel transport module.
[ 3.548242] Unpacking initramfs…
[ 3.907597] Freeing initrd memory: 5320K (cface000 - d0000000)
[ 3.908028] hw perfevents: enabled with armv7_cortex_a8 PMU driver, 5 counters available
[ 3.910297] futex hash table entries: 256 (order: 1, 8192 bytes)
[ 3.910397] audit: initializing netlink subsys (disabled)
[ 3.910468] audit: type=2000 audit(3.840:1): initialized
[ 3.920259] zbud: loaded
[ 3.920873] VFS: Disk quotas dquot_6.6.0
[ 3.921099] VFS: Dquot-cache hash table entries: 1024 (order 0, 4096 bytes)
[ 3.923427] NFS: Registering the id_resolver key type
[ 3.923490] Key type id_resolver registered
[ 3.923499] Key type id_legacy registered
[ 3.923522] nfs4filelayout_init: NFSv4 File Layout Driver Registering…
[ 3.923817] fuse init (API version 7.23)
[ 3.924357] SGI XFS with ACLs, security attributes, realtime, no debug enabled
[ 3.932345] Block layer SCSI generic (bsg) driver version 0.4 loaded (major 249)
[ 3.932550] io scheduler noop registered
[ 3.932566] io scheduler deadline registered
[ 3.932630] io scheduler cfq registered (default)
[ 3.933663] pinctrl-single 44e10800.pinmux: 142 pins at pa f9e10800 size 568
[ 3.935444] Serial: 8250/16550 driver, 6 ports, IRQ sharing disabled
[ 3.938330] 44e09000.serial: ttyS0 at MMIO 0x44e09000 (irq = 155, base_baud = 3000000) is a 8250
[ 4.780792] console [ttyS0] enabled
[ 4.785512] [drm] Initialized drm 1.1.0 20060810
[ 4.791370] usbcore: registered new interface driver dln2
[ 4.855562] davinci_mdio 4a101000.mdio: davinci mdio revision 1.6
[ 4.861697] davinci_mdio 4a101000.mdio: detected phy mask fffffffe
[ 4.868213] davinci_mdio: dt: updated phy_id[0] from phy_mask[fffffffe]
[ 4.881250] libphy: 4a101000.mdio: probed
[ 4.885304] davinci_mdio 4a101000.mdio: phy[0]: device 4a101000.mdio:00, driver SMSC LAN8710/LAN8720
[ 4.895147] cpsw 4a100000.ethernet: Detected MACID = a0:f6:fd:8a:71:53
[ 4.903327] ehci_hcd: USB 2.0 ‘Enhanced’ Host Controller (EHCI) Driver
[ 4.910012] ehci-platform: EHCI generic platform driver
[ 4.915425] ehci-omap: OMAP-EHCI Host Controller driver
[ 4.921022] usbcore: registered new interface driver usb-storage
[ 4.928488] 47401300.usb-phy supply vcc not found, using dummy regulator
[ 4.958888] 47401b00.usb-phy supply vcc not found, using dummy regulator
[ 4.997710] musb-hdrc musb-hdrc.1.auto: MUSB HDRC host driver
[ 5.003510] musb-hdrc musb-hdrc.1.auto: new USB bus registered, assigned bus number 1
[ 5.011620] usb usb1: New USB device found, idVendor=1d6b, idProduct=0002
[ 5.018443] usb usb1: New USB device strings: Mfr=3, Product=2, SerialNumber=1
[ 5.025698] usb usb1: Product: MUSB HDRC host driver
[ 5.030684] usb usb1: Manufacturer: Linux 4.4.16-bone-rt-r11 musb-hcd
[ 5.037153] usb usb1: SerialNumber: musb-hdrc.1.auto
[ 5.042875] hub 1-0:1.0: USB hub found
[ 5.046681] hub 1-0:1.0: 1 port detected
[ 5.084213] mousedev: PS/2 mouse device common for all mice
[ 5.091665] omap_rtc 44e3e000.rtc: rtc core: registered 44e3e000.rtc as rtc0
[ 5.099696] i2c /dev entries driver
[ 5.103586] Driver for 1-wire Dallas network protocol.
[ 5.110738] omap_wdt: OMAP Watchdog Timer Rev 0x01: initial timeout 60 sec
[ 5.118021] sdhci: Secure Digital Host Controller Interface driver
[ 5.124231] sdhci: Copyright© Pierre Ossman
[ 5.129011] omap_hsmmc 48060000.mmc: Got CD GPIO
[ 5.205780] Synopsys Designware Multimedia Card Interface Driver
[ 5.212038] sdhci-pltfm: SDHCI platform and OF driver helper
[ 5.217864] hidraw: raw HID events driver © Jiri Kosina
[ 5.223871] usbcore: registered new interface driver usbhid
[ 5.229472] usbhid: USB HID core driver
[ 5.233590] ashmem: initialized
[ 5.237367] remoteproc0: wkup_m3 is available
[ 5.241838] remoteproc0: Note: remoteproc is still under development and considered experimental.
[ 5.243792] mmc0: host does not support reading read-only switch, assuming write-enable
[ 5.246854] mmc0: new high speed SDHC card at address aaaa
[ 5.255823] mmcblk0: mmc0:aaaa SL08G 7.40 GiB
[ 5.257386] mmcblk0: p1
[ 5.277184] remoteproc0: THE BINARY FORMAT IS NOT YET FINALIZED, and backward compatibility isn’t yet guaranteed.
[ 5.290180] NET: Registered protocol family 10
[ 5.295927] mip6: Mobile IPv6
[ 5.298932] NET: Registered protocol family 17
[ 5.303524] Key type dns_resolver registered
[ 5.307822] mpls_gso: MPLS GSO support
[ 5.311824] omap_voltage_late_init: Voltage driver support not added
[ 5.318740] ThumbEE CPU extension supported.
[ 5.323051] Registering SWP/SWPB emulation handler
[ 5.328677] registered taskstats version 1
[ 5.332950] zswap: loaded using pool lzo/zbud
[ 5.339869] Btrfs loaded
[ 5.361375] Key type encrypted registered
[ 5.367645] input: tps65217_pwr_but as /devices/platform/ocp/44e0b000.i2c/i2c-0/0-0024/input/input0
[ 5.403030] tps65217 0-0024: TPS65217 ID 0xe version 1.2
[ 5.408865] at24 0-0050: 32768 byte 24c256 EEPROM, writable, 1 bytes/write
[ 5.415807] omap_i2c 44e0b000.i2c: bus 0 rev0.11 at 400 kHz
[ 5.422873] at24 2-0054: 32768 byte 24c256 EEPROM, writable, 1 bytes/write
[ 5.430181] at24 2-0055: 32768 byte 24c256 EEPROM, writable, 1 bytes/write
[ 5.437423] at24 2-0056: 32768 byte 24c256 EEPROM, writable, 1 bytes/write
[ 5.444663] at24 2-0057: 32768 byte 24c256 EEPROM, writable, 1 bytes/write
[ 5.451593] omap_i2c 4819c000.i2c: bus 2 rev0.11 at 100 kHz
[ 5.463657] bone_capemgr bone_capemgr: Baseboard: ‘A335BNLT,00C0,1216BBBK00A5’
[ 5.470928] bone_capemgr bone_capemgr: compatible-baseboard=ti,beaglebone-black - #slots=4
[ 5.535550] bone_capemgr bone_capemgr: slot #0: No cape found
[ 5.595546] bone_capemgr bone_capemgr: slot #1: No cape found
[ 5.655545] bone_capemgr bone_capemgr: slot #2: No cape found
[ 5.715546] bone_capemgr bone_capemgr: slot #3: No cape found
[ 5.721335] bone_capemgr bone_capemgr: enabled_partno PARTNO ‘BB-APA-01’ VER ‘N/A’ PR ‘0’
[ 5.729549] bone_capemgr bone_capemgr: slot #4: override
[ 5.734888] bone_capemgr bone_capemgr: Using override eeprom data at slot 4
[ 5.741885] bone_capemgr bone_capemgr: slot #4: ‘Override Board Name,00A0,Override Manuf,BB-APA-01’
[ 5.751047] bone_capemgr bone_capemgr: enabled_partno PARTNO ‘BB-ADC’ VER ‘N/A’ PR ‘0’
[ 5.759001] bone_capemgr bone_capemgr: slot #5: override
[ 5.764337] bone_capemgr bone_capemgr: Using override eeprom data at slot 5
[ 5.771333] bone_capemgr bone_capemgr: slot #5: ‘Override Board Name,00A0,Override Manuf,BB-ADC’
[ 5.780533] bone_capemgr bone_capemgr: initialized OK.
[ 5.789203] 48024000.serial: ttyS2 at MMIO 0x48024000 (irq = 187, base_baud = 3000000) is a 8250
[ 5.790279] bone_capemgr bone_capemgr: slot #5: dtbo ‘BB-ADC-00A0.dtbo’ loaded; overlay id #1
[ 5.795844] 481a8000.serial: ttyS4 at MMIO 0x481a8000 (irq = 189, base_baud = 3000000) is a 8250
[ 5.797143] 481aa000.serial: ttyS5 at MMIO 0x481aa000 (irq = 190, base_baud = 3000000) is a 8250
[ 5.798317] 48022000.serial: ttyS1 at MMIO 0x48022000 (irq = 191, base_baud = 3000000) is a 8250
[ 5.798702] bone_capemgr bone_capemgr: slot #4: dtbo ‘BB-APA-01-00A0.dtbo’ loaded; overlay id #0
[ 5.848485] omap_rtc 44e3e000.rtc: setting system clock to 2000-01-01 00:00:01 UTC (946684801)
[ 5.857171] of_cfs_init
[ 5.859724] of_cfs_init: OK
[ 5.868584] Freeing unused kernel memory: 472K (c0a94000 - c0b0a000)
Loading, please wait…
[ 6.057862] systemd-udevd[117]: starting version 215
[ 6.065012] random: systemd-udevd urandom read with 10 bits of entropy available
Begin: Loading essential drivers … done.
Begin: Running /scripts/init-premount … done.
Begin: Mounting root file system … Begin: Running /scripts/local-top … done.
Begin: Running /scripts/local-premount … Scanning for Btrfs filesystems
done.
Begin: Will now check file system … fsck from util-linux 2.25.2
Checking all file systems.
done.
mount: can’t find /root in /etc/fstab
done.
Target filesystem doesn’t have requested /opt/scripts/tools/eMMC/init-eMMC-flasher-v3.sh.
Begin: Running /scripts/local-bottom … done.
Begin: Running /scripts/init-bottom … mount: mounting /dev on /root/dev failed: No such file or directory
done.
No init found. Try passing init= bootarg.
modprobe: module i8042 not found in modules.dep
modprobe: module ehci-pci not found in modules.dep
modprobe: module ehci-orion not found in modules.dep
modprobe: module uhci-hcd not found in modules.dep
modprobe: module ohci-hcd not found in modules.dep
BusyBox v1.22.1 (Debian 1:1.22.0-9+deb8u1) built-in shell (ash)
Enter ‘help’ for a list of built-in commands.
/bin/sh: can’t access tty; job control turned off
(initramfs)